Tutorials

Tutorials

• 1. AstroLogics Tutorial, Boolean Network Analysis and Clustering : Bonesis Tutorial
  • 1.1. Overview of AstroLogics Framework
  • 1.2. Required Libraries
  • 1.3. Step 1: Load Model Ensemble
  • 1.4. Step 2: Simulate the model ensemble
  • 1.5. Step 3 (Optional) : Trajectory visualization
  • 1.6. Step 4: Calculate Distance Matrix
  • 1.7. Step 5: Dimensionality Reduction and Visualization
  • 1.8. Step 6: Model Clustering
  • 1.9. Step 7 (Optional) : Trajectory Analysis
  • 1.10. Step 8: Logic Function Analysis
  • 1.11. Step 9 : Calculate statistic of Logic features (clauses)
  • 1.12. Step 9: Advanced Trajectory Analysis
  • 1.13. Step 10: Logic Feature Heatmap
  • 1.14. Key Findings and Biological Interpretation
  • 1.15. Applications and Extensions
  • 1.16. Conclusion
• 2. AstroLogics Tutorial, Boolean Network Analysis and Clustering : Herault Hematopoiesis
  • 2.1. Overview of AstroLogics Framework
  • 2.2. Required Libraries
  • 2.3. Step 1: Load Model Ensemble
  • 2.4. Step 2: Simulate the model ensemble
  • 2.5. Step 3 : Calculate the trajectory and visualize the distance matrix using MDS
  • 2.6. Step 4: Model Clustering
  • 2.7. Step 5: Logic Function Analysis
  • 2.8. Step 6 : Calculate statistic of Logic features (clauses)
  • 2.9. Step 7: Advanced Trajectory Analysis
  • 2.10. Step 8 : Logic Feature Heatmap
• 3. AstroLogics Tutorial, Boolean Network Analysis and Clustering : Invasion model
  • 3.1. Overview of AstroLogics Framework
  • 3.2. Required Libraries
  • 3.3. Step 1: Load Model Ensemble
  • 3.4. Step 2: Simulate the model ensemble
  • 3.5. Step 3 : Calculate the trajectory and visualize the distance matrix using MDS
  • 3.6. Step 4: Model Clustering
  • 3.7. Step 5: Logic Function Analysis
  • 3.8. Step 6 : Calculate statistic of Logic features (clauses)
  • 3.9. Step 7 : Subset models
  • 3.10. Step 7: Advanced Trajectory Analysis
  • 3.11. Step 8 : Logic Feature Heatmap